STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0290KEGG: stp:Strop_0251 hypothetical protein. (139 aa)    
Predicted Functional Partners:
Sare_1473
KEGG: stp:Strop_1531 hypothetical protein.
  
     0.645
Sare_3596
PFAM: protein of unknown function DUF164; KEGG: stp:Strop_3356 protein of unknown function DUF164.
  
     0.576
Sare_1310
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_1353 GCN5-related N-acetyltransferase.
  
     0.570
Sare_3461
KEGG: stp:Strop_3235 hypothetical protein.
  
     0.566
mshD
GCN5-related N-acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
 
     0.556
Sare_3627
KEGG: stp:Strop_3385 hypothetical protein.
  
     0.528
Sare_0891
KEGG: stp:Strop_0949 hypothetical protein.
  
    0.522
Sare_2313
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: stp:Strop_2159 peptidase M20.
  
     0.519
Sare_0289
PFAM: regulatory protein DeoR; KEGG: stp:Strop_0248 transcriptional regulator, DeoR family.
       0.510
Sare_0288
PFAM: sugar isomerase (SIS); KEGG: stp:Strop_0247 sugar isomerase (SIS).
       0.495
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.