STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0299Hypothetical protein. (389 aa)    
Predicted Functional Partners:
Sare_0221
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ace:Acel_1450 efflux transporter, RND family, MFP subunit.
  
 
 0.886
Sare_4031
PFAM: acriflavin resistance protein; KEGG: stp:Strop_3649 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.851
Sare_0218
KEGG: ade:Adeh_3412 secretion protein HlyD.
  
 
 0.757
Sare_0410
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: kra:Krad_1868 efflux transporter, RND family, MFP subunit.
  
 
 0.757
Sare_4523
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_4103 ATP-binding region, ATPase domain protein domain protein.
  
 
 0.514
Sare_0296
PFAM: peptidase S15; ABC transporter related; X-Pro dipeptidyl-peptidase domain protein; SMART: AAA ATPase; KEGG: stp:Strop_0256 ABC transporter related.
     
 0.417
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.