STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0318Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: stp:Strop_0275 aminotransferase, class V. (414 aa)    
Predicted Functional Partners:
Sare_3305
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: stp:Strop_3078 SUF system FeS assembly protein, NifU family.
 
 
 0.955
Sare_3307
KEGG: stp:Strop_3080 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.915
Sare_3310
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: stp:Strop_3083 FeS assembly protein SufB.
 
 
 0.869
Sare_3309
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: stp:Strop_3082 FeS assembly protein SufD.
 
 
 0.849
Sare_2039
PFAM: aminotransferase class V; KEGG: aav:Aave_1124 aminotransferase, class V.
  
     0.758
Sare_0319
KEGG: stp:Strop_0276 membrane protein-like protein.
       0.542
Sare_0025
PFAM: Fe-S metabolism associated SufE; KEGG: stp:Strop_0021 Fe-S metabolism associated SufE.
  
 
 0.465
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
  
 0.429
Sare_3304
PFAM: protein of unknown function DUF59; KEGG: stp:Strop_3077 protein of unknown function DUF59.
 
  
 0.414
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.