STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0324PFAM: protein of unknown function DUF402; KEGG: stp:Strop_0281 protein of unknown function DUF402. (168 aa)    
Predicted Functional Partners:
Sare_2532
KEGG: stp:Strop_0576 hypothetical protein.
  
     0.631
Sare_1864
KEGG: stp:Strop_1871 hypothetical protein.
  
     0.616
Sare_0323
SMART: helicase c2; KEGG: stp:Strop_0280 helicase C2.
       0.602
Sare_4113
KEGG: stp:Strop_3732 hypothetical protein.
  
     0.592
Sare_4187
Hypothetical protein.
  
     0.557
Sare_4104
KEGG: stp:Strop_3723 hypothetical protein.
  
     0.546
Sare_0111
KEGG: stp:Strop_0112 hypothetical protein.
  
     0.541
Sare_0764
KEGG: stp:Strop_0820 hypothetical protein.
  
     0.515
Sare_4185
KEGG: reu:Reut_B4079 hypothetical protein.
  
     0.488
Sare_4536
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: stp:Strop_4115 methyltransferase type 12.
  
     0.477
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.