STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0341PFAM: protein of unknown function DUF1416; KEGG: stp:Strop_0297 protein of unknown function DUF1416. (111 aa)    
Predicted Functional Partners:
Sare_0340
PFAM: Rhodanese domain protein; KEGG: stp:Strop_0296 rhodanese domain protein.
 
  
 0.908
Sare_1322
KEGG: stp:Strop_1365 hypothetical protein.
  
     0.755
Sare_3829
KEGG: stp:Strop_3450 hypothetical protein.
  
     0.743
Sare_3893
KEGG: stp:Strop_3518 hypothetical protein.
  
     0.711
Sare_0781
PFAM: AIG2 family protein; KEGG: stp:Strop_0836 hypothetical protein.
  
     0.649
Sare_3531
Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.649
Sare_4208
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: stp:Strop_3818 chorismate mutase.
  
     0.645
Sare_0399
KEGG: stp:Strop_0332 hypothetical protein.
  
     0.642
Sare_3498
Conserved hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.637
Sare_4094
TIGRFAM: Anti-sigma factor RshA; KEGG: stp:Strop_3713 hypothetical protein.
  
     0.633
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.