STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0347KEGG: sco:SCO6610 secreted protein. (326 aa)    
Predicted Functional Partners:
Sare_2207
KEGG: stp:Strop_2321 hypothetical protein.
  
     0.548
Sare_2768
KEGG: stp:Strop_2571 hypothetical protein.
 
     0.527
Sare_4840
KEGG: sen:SACE_5459 hypothetical protein.
  
     0.511
Sare_4835
KEGG: mgi:Mflv_3843 hypothetical protein.
  
     0.487
Sare_2736
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO7652 acetyltransferase.
  
     0.482
Sare_4831
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.478
Sare_4586
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_2309 major facilitator superfamily MFS_1.
  
     0.458
Sare_4368
PFAM: beta-lactamase; KEGG: stp:Strop_3984 serine-type D-Ala-D-Ala carboxypeptidase.
 
  
 0.448
Sare_3186
PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; KEGG: stp:Strop_2965 cellulose-binding, family II; Belongs to the glycosyl hydrolase 18 family.
  
  
 0.428
Sare_1524
KEGG: sen:SACE_5375 putative cyclase-dehydratase.
  
     0.424
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.