STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0366Cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sma:SAV3648 putative cystathionine beta-synthase. (340 aa)    
Predicted Functional Partners:
Sare_0367
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: sma:SAV3645 ornithine cyclodeaminase.
 
 
 0.985
Sare_0365
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3640 multidrug resistance protein.
  
    0.774
Sare_2181
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ade:Adeh_3707 cystathionine gamma-synthase.
 
 
 0.755
Sare_0863
Cystathionine gamma-synthase; PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: stp:Strop_0920 cystathionine gamma-synthase.
 
 
 0.754
Sare_1158
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: stp:Strop_1267 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme.
 
 
 0.716
cysS
KEGG: stp:Strop_4222 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.662
Sare_1692
KEGG: stp:Strop_1694 hypothetical protein.
  
 
 0.636
Sare_4172
PFAM: adenylylsulfate kinase; KEGG: stp:Strop_3792 adenylylsulfate kinase.
  
  
 0.634
Sare_3392
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: stp:Strop_3167 ferredoxin-dependent glutamate synthase.
     
 0.606
Sare_0364
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: sma:SAV3636 SyrP-like protein.
     
 0.430
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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