STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0378PFAM: L-asparaginase II; KEGG: stp:Strop_0315 L-asparaginase II. (326 aa)    
Predicted Functional Partners:
Sare_0377
PFAM: protein of unknown function DUF849; KEGG: stp:Strop_0314 protein of unknown function DUF849.
       0.666
Sare_0379
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_0316 transcriptional regulator, XRE family.
       0.613
Sare_0376
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: stp:Strop_0313 glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
 
     0.589
Sare_0375
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: stp:Strop_0312 ferric uptake regulator, Fur family; Belongs to the Fur family.
       0.488
Sare_0380
KEGG: stp:Strop_0317 hypothetical protein.
       0.436
Sare_0381
KEGG: stp:Strop_0318 hypothetical protein.
 
     0.436
Sare_0374
PFAM: aminotransferase class IV; KEGG: stp:Strop_0311 aminotransferase, class IV.
       0.422
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.