STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0396KEGG: stp:Strop_0329 hypothetical protein. (262 aa)    
Predicted Functional Partners:
Sare_0397
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0330 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.911
mshA
Glycosyl transferase group 1; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.
 
    0.601
Sare_0399
KEGG: stp:Strop_0332 hypothetical protein.
 
     0.580
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
  
 0.580
Sare_0914
KEGG: stp:Strop_0977 hypothetical protein.
  
  
 0.486
Sare_1561
PFAM: conserved hypothetical protein; KEGG: stp:Strop_1601 hypothetical protein.
  
     0.437
Sare_4036
KEGG: stp:Strop_3654 hypothetical protein.
  
     0.429
Sare_3295
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: stp:Strop_3068 protein of unknown function DUF692.
  
    0.403
Sare_0296
PFAM: peptidase S15; ABC transporter related; X-Pro dipeptidyl-peptidase domain protein; SMART: AAA ATPase; KEGG: stp:Strop_0256 ABC transporter related.
  
   
 0.402
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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