STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0405KEGG: stp:Strop_0338 hypothetical protein. (265 aa)    
Predicted Functional Partners:
Sare_0406
PFAM: Ppx/GppA phosphatase; KEGG: stp:Strop_0339 Ppx/GppA phosphatase.
       0.658
Sare_0399
KEGG: stp:Strop_0332 hypothetical protein.
  
     0.641
Sare_4142
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_3760 GCN5-related N-acetyltransferase.
  
     0.623
Sare_0407
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: stp:Strop_0340 xylose isomerase domain protein TIM barrel.
       0.551
Sare_4793
PFAM: Anion-transporting ATPase; KEGG: stp:Strop_4351 anion-transporting ATPase.
  
     0.531
Sare_1163
KEGG: stp:Strop_1273 hypothetical protein.
  
     0.522
Sare_1239
PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1330 Rieske (2Fe-2S) domain protein.
  
     0.486
Sare_2357
KEGG: stp:Strop_2240 hypothetical protein.
  
     0.465
Sare_4794
KEGG: stp:Strop_4352 hypothetical protein.
  
     0.443
Sare_2216
PFAM: von Willebrand factor type A; KEGG: stp:Strop_2073 von Willebrand factor, type A.
  
     0.441
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.