STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0417PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0347 major facilitator superfamily MFS_1. (420 aa)    
Predicted Functional Partners:
Sare_0506
PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: stp:Strop_0418 major facilitator superfamily MFS_1.
  
     0.547
Sare_0415
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_0345 NAD-dependent epimerase/dehydratase.
       0.479
Sare_0416
PFAM: phospholipid/glycerol acyltransferase; KEGG: stp:Strop_0346 phospholipid/glycerol acyltransferase.
       0.479
Sare_5088
KEGG: stp:Strop_4571 hypothetical protein.
  
     0.443
Sare_3887
KEGG: stp:Strop_3512 GCN5-related N-acetyltransferase.
   
    0.429
Sare_2607
PFAM: NUDIX hydrolase; KEGG: stp:Strop_2445 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
  
     0.418
Sare_2762
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: stp:Strop_2566 FAD-binding 9, siderophore-interacting domain protein.
  
     0.410
Sare_4892
KEGG: stp:Strop_4418 hypothetical protein.
  
     0.403
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.