STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0451KEGG: stp:Strop_0380 hypothetical protein. (75 aa)    
Predicted Functional Partners:
Sare_3526
PFAM: cytochrome c class I; KEGG: stp:Strop_3294 cytochrome c, class I.
  
     0.713
Sare_0452
PFAM: regulatory protein TetR; KEGG: stp:Strop_0381 transcriptional regulator, TetR family.
       0.633
Sare_3525
PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_3293 Rieske (2Fe-2S) domain protein.
  
     0.524
Sare_3531
Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.513
Sare_3567
PFAM: RDD domain containing protein; KEGG: stp:Strop_3331 RDD domain containing protein.
  
     0.506
Sare_5100
KEGG: stp:Strop_4582 hypothetical protein.
  
     0.502
Sare_0453
KEGG: stp:Strop_0382 hypothetical protein.
       0.479
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.477
Sare_0005
PFAM: protein of unknown function DUF721; KEGG: stp:Strop_0006 protein of unknown function DUF721.
  
     0.468
Sare_0454
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: stp:Strop_0383 UBA/ThiF-type NAD/FAD binding protein.
       0.450
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.