STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0506PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: stp:Strop_0418 major facilitator superfamily MFS_1. (426 aa)    
Predicted Functional Partners:
Sare_0141
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0135 major facilitator superfamily MFS_1.
  
     0.729
Sare_0505
PFAM: regulatory protein MarR; KEGG: stp:Strop_0417 transcriptional regulator, MarR family.
     
 0.724
Sare_0236
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0208 hypothetical protein.
  
     0.629
Sare_0507
KEGG: stp:Strop_0419 hypothetical protein.
       0.559
Sare_0417
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0347 major facilitator superfamily MFS_1.
  
     0.547
Sare_2666
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_2483 major facilitator superfamily MFS_1.
  
     0.482
Sare_0508
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.475
Sare_0504
PFAM: Xanthine/uracil/vitamin C permease; KEGG: stp:Strop_0416 xanthine/uracil/vitamin C permease.
       0.446
Sare_3887
KEGG: stp:Strop_3512 GCN5-related N-acetyltransferase.
   
    0.429
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.