STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0519PFAM: ABC-2 type transporter; KEGG: stp:Strop_0431 ABC-2 type transporter. (275 aa)    
Predicted Functional Partners:
Sare_0520
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_0432 ABC transporter related.
 
 
 0.998
Sare_1680
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_1685 ABC transporter related.
 
 
 0.986
Sare_0522
PFAM: glycosyl transferase family 2; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: stp:Strop_0434 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
 
  
 0.919
Sare_0521
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: stp:Strop_0433 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.857
Sare_0518
KEGG: stp:Strop_0430 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
    0.613
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
     
 0.533
Sare_1681
PFAM: ABC-2 type transporter; KEGG: stp:Strop_1686 ABC-2 type transporter.
  
  
 
0.530
Sare_0523
KEGG: stp:Strop_0436 hypothetical protein.
       0.486
Sare_4825
KEGG: bpm:BURPS1710b_A1616 hypothetical protein.
  
  
 0.472
Sare_0046
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: stp:Strop_0041 NAD-dependent epimerase/dehydratase.
 
  
 0.422
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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