STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0527PFAM: dienelactone hydrolase; KEGG: stp:Strop_0439 dienelactone hydrolase. (215 aa)    
Predicted Functional Partners:
Sare_5062
PFAM: phosphoribosyltransferase; KEGG: stp:Strop_4550 phosphoribosyltransferase.
     0.981
Sare_4043
PFAM: Erythromycin esterase; KEGG: stp:Strop_3666 erythromycin esterase.
     0.913
Sare_0526
Hypothetical protein.
       0.563
Sare_0528
KEGG: stp:Strop_0440 hypothetical protein.
       0.466
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.457
Sare_3634
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ava:Ava_C0139 transport-associated.
  
    0.436
Sare_3648
Peptidase M50; PFAM: CBS domain containing protein; peptidase M50; KEGG: stp:Strop_3400 peptidase M50; Belongs to the peptidase M50B family.
 
     0.426
Sare_4061
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ava:Ava_C0139 transport-associated.
  
    0.425
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.