STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0540KEGG: plu:plu1436 hypothetical protein. (409 aa)    
Predicted Functional Partners:
Sare_0539
KEGG: plu:plu1434 hypothetical protein.
 
     0.848
Sare_1058
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: ppu:PP_3787 hypothetical protein.
  
     0.663
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
 
  
 0.643
Sare_3221
PFAM: cyclase family protein; KEGG: stp:Strop_3004 cyclase family protein.
  
  
 0.552
Sare_1045
PFAM: FAD dependent oxidoreductase; KEGG: fra:Francci3_3274 FAD dependent oxidoreductase.
  
    0.488
Sare_1057
PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: fra:Francci3_3269 peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
  
     0.471
Sare_0541
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: stp:Strop_0450 methyltransferase type 12.
       0.463
kynA
Tryptophan 23-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
 
     0.444
Sare_0484
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: plu:plu0757 hypothetical protein.
  
     0.438
Sare_2672
PFAM: Phytanoyl-CoA dioxygenase; KEGG: stp:Strop_2489 phytanoyl-CoA dioxygenase.
  
    0.407
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.