STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0544KEGG: mbb:BCG_3912 hypothetical protein. (179 aa)    
Predicted Functional Partners:
Sare_4645
KEGG: sen:SACE_3171 hypothetical protein.
  
     0.740
Sare_4703
KEGG: stp:Strop_4198 hypothetical protein.
  
     0.737
Sare_3102
KEGG: stp:Strop_4199 hypothetical protein.
  
     0.715
Sare_4705
KEGG: stp:Strop_4199 hypothetical protein.
  
     0.713
Sare_4646
KEGG: stp:Strop_4198 hypothetical protein.
  
     0.693
Sare_3101
KEGG: stp:Strop_4198 hypothetical protein.
  
     0.686
Sare_3148
TIGRFAM: thioester reductase domain; PFAM: AMP-dependent synthetase and ligase; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; Male sterility domain; KEGG: msm:MSMEG_2956 NAD dependent epimerase/dehydratase family protein.
  
     0.672
Sare_2033
PFAM: protein of unknown function DUF1205; KEGG: stm:STM2773 putative glycosyl transferase.
  
     0.599
Sare_1267
PFAM: NDP-hexose 23-dehydratase; KEGG: sen:SACE_0717 NDP-4-keto-6-deoxy-glucose 2,3-dehydratase.
  
     0.502
Sare_2025
PFAM: NDP-hexose 23-dehydratase; KEGG: sma:SAV950 dTDP-4-keto-6-deoxy-L-hexose2,3-dehydratase.
  
     0.479
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.