STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0555PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: stp:Strop_2699 ASPIC/UnbV domain protein. (677 aa)    
Predicted Functional Partners:
Sare_0556
KEGG: stp:Strop_2698 hypothetical protein.
 
     0.951
Sare_2177
PFAM: ASPIC/UnbV domain protein; KEGG: stp:Strop_2699 ASPIC/UnbV domain protein.
  
  
 
0.903
Sare_0552
KEGG: stp:Strop_2696 hypothetical protein.
 
     0.864
Sare_0551
Erythronolide synthase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: stp:Strop_2697 beta-ketoacyl synthase.
 
     0.863
Sare_0550
PFAM: protein of unknown function DUF1702; KEGG: stp:Strop_2700 protein of unknown function DUF1702.
 
     0.845
Sare_0549
PFAM: protein of unknown function DUF1702; KEGG: stp:Strop_2701 protein of unknown function DUF1702.
 
     0.837
Sare_0548
PFAM: Carboxymuconolactone decarboxylase; KEGG: stp:Strop_2703 alkylhydroperoxidase like protein, AhpD family.
 
     0.825
Sare_0545
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.816
Sare_0546
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: stp:Strop_2704 glucose-methanol-choline oxidoreductase.
 
     0.816
Sare_0554
PFAM: cytochrome P450; KEGG: stp:Strop_2694 cytochrome P450.
 
     0.812
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.