STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0576PFAM: FAD dependent oxidoreductase; KEGG: sen:SACE_2961 fructosyl-amino acid oxidase, putative. (365 aa)    
Predicted Functional Partners:
Sare_0575
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bxe:Bxe_C0508 putative dehydrogenase flavoprotein.
  
  
 0.783
Sare_0574
Phthalate 4,5-dioxygenase; PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4795 phthalate 4,5-dioxygenase.
     
 0.781
Sare_3548
TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: stp:Strop_3316 glycine cleavage system T protein.
  
 
 0.643
Sare_1353
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: stp:Strop_1395 ornithine cyclodeaminase/mu-crystallin.
 
  
 0.483
Sare_1823
KEGG: stp:Strop_1832 hypothetical protein.
     
 0.456
Sare_3003
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sus:Acid_2667 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein.
  
     0.433
Sare_0570
Methionine--tRNA ligase; PFAM: Cupin 2 conserved barrel domain protein; tRNA synthetase class I (M); KEGG: pen:PSEEN0982 methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.415
Sare_0573
PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; KEGG: rha:RHA1_ro08658 possible dehydrogenase.
       0.405
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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