STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0589PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_2976 haloacid dehalogenase domain protein hydrolase. (231 aa)    
Predicted Functional Partners:
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.687
Sare_0588
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
       0.636
Sare_0581
PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_1246 hydrolase, NUDIX family.
 
  
 0.584
Sare_0586
TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: fal:FRAAL6592 hypothetical protein.
     
 0.492
Sare_0587
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sco:SCO6488 acyl-peptide hydrolase.
       0.483
Sare_0584
Hypothetical protein.
       0.465
Sare_0585
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV6684 transmembrane transport protein.
       0.465
Sare_0582
PFAM: SAICAR synthetase; KEGG: mth:MTH170 phosphoribosylaminoimidazole-succinocarboxamide synthase.
       0.441
Sare_0583
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dra:DR_1467 short chain dehydrogenase.
       0.434
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.