STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0655Transcriptional regulator, PaaX family; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: stp:Strop_0708 transcriptional regulator, PaaX family. (272 aa)    
Predicted Functional Partners:
Sare_0654
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_0707 enoyl-CoA hydratase/isomerase.
 
   
 0.887
Sare_2516
PFAM: Silent information regulator protein Sir2; KEGG: stp:Strop_2378 silent information regulator protein Sir2.
   
    0.643
Sare_4469
TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: stp:Strop_4070 phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.643
Sare_4472
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: stp:Strop_4073 phenylacetate-CoA oxygenase, PaaG subunit.
 
  
 0.637
Sare_4470
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: stp:Strop_4071 phenylacetate-CoA oxygenase, PaaI subunit.
 
  
 0.619
Sare_0656
KEGG: stp:Strop_0709 hypothetical protein.
       0.574
Sare_4471
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: stp:Strop_4072 phenylacetate-CoA oxygenase, PaaH subunit.
 
   
 0.549
Sare_2696
TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: sco:SCO7470 putative phenylacetic acid degradation protein PaaI.
 
   
 0.426
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.