STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0664MgtE intracellular region; PFAM: CBS domain containing protein; MgtE intracellular region; KEGG: stp:Strop_0717 MgtE intracellular region. (427 aa)    
Predicted Functional Partners:
Sare_0663
PFAM: protein of unknown function DUF1003; KEGG: stp:Strop_0716 protein of unknown function DUF1003.
 
     0.965
Sare_0665
TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: stp:Strop_0718 phenazine biosynthesis protein PhzF family.
       0.607
Sare_0662
Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.583
Sare_0666
KEGG: stp:Strop_0719 hypothetical protein.
       0.535
Sare_4998
PFAM: Mg2 transporter protein CorA family protein; KEGG: stp:Strop_4484 magnesium and cobalt transport protein CorA.
     
 0.495
glyQ
glycyl-tRNA synthetase, beta subunit; KEGG: fra:Francci3_1275 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA synthetase, beta subunit; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase beta subunit.
       0.461
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.440
Sare_1448
PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: stp:Strop_1483 nucleic acid binding, OB-fold, tRNA/helicase-type.
  
     0.430
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.