STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0675TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: stp:Strop_0730 thioredoxin; Belongs to the thioredoxin family. (120 aa)    
Predicted Functional Partners:
Sare_4022
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: stp:Strop_3640 low molecular weight phosphotyrosine protein phosphatase.
  
 
 0.725
Sare_4349
KEGG: stp:Strop_3965 hypothetical protein.
   
    0.675
Sare_4121
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin 2; KEGG: stp:Strop_3740 glutaredoxin-like protein.
     
 0.659
Sare_5097
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stp:Strop_4579 thioredoxin reductase.
 
 
 0.639
Sare_3392
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: stp:Strop_3167 ferredoxin-dependent glutamate synthase.
   
 
 0.604
Sare_0817
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: stp:Strop_0871 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.590
Sare_1005
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: stp:Strop_1115 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
   
 
 0.541
Sare_4668
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: stp:Strop_4228 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.497
Sare_4957
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: stp:Strop_4442 pyridine nucleotide-disulphide oxidoreductase dimerisation region.
  
 
 0.497
Sare_3325
KEGG: stp:Strop_3098 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.493
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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