STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0680KEGG: stp:Strop_0734 hypothetical protein. (283 aa)    
Predicted Functional Partners:
Sare_0679
KEGG: stp:Strop_0277 hypothetical protein.
       0.923
Sare_3632
KEGG: stp:Strop_3390 hypothetical protein.
  
    0.709
Sare_4681
PFAM: RDD domain containing protein; KEGG: stp:Strop_4251 RDD domain containing protein.
 
    0.672
Sare_3518
KEGG: stp:Strop_3286 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
 
     0.671
Sare_4736
KEGG: stp:Strop_4300 hypothetical protein.
  
     0.667
Sare_3914
KEGG: stp:Strop_3539 hypothetical protein.
  
     0.665
Sare_0531
KEGG: stp:Strop_0443 hypothetical protein.
 
     0.658
Sare_0681
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: stp:Strop_0735 PHP C-terminal domain protein.
       0.635
Sare_4735
KEGG: stp:Strop_4299 hypothetical protein.
  
     0.629
Sare_4734
KEGG: stp:Strop_4298 hypothetical protein.
  
     0.613
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.