STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0701KEGG: stp:Strop_0759 extracellular ligand-binding receptor. (423 aa)    
Predicted Functional Partners:
Sare_4267
PFAM: Extracellular ligand-binding receptor; KEGG: stp:Strop_3876 extracellular ligand-binding receptor.
  
  
  0.968
Sare_2954
ABC-type branched-chain amino acid transport systems periplasmic component-like protein; KEGG: sfu:Sfum_2285 extracellular ligand-binding receptor.
  
  
  0.957
Sare_0178
PFAM: Extracellular ligand-binding receptor; KEGG: stp:Strop_3150 extracellular ligand-binding receptor.
  
  
  0.954
Sare_3377
PFAM: Extracellular ligand-binding receptor; KEGG: stp:Strop_3150 extracellular ligand-binding receptor.
  
  
  0.953
Sare_0703
PFAM: inner-membrane translocator; KEGG: stp:Strop_0761 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.951
Sare_0704
PFAM: inner-membrane translocator; KEGG: stp:Strop_0762 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.936
Sare_1793
KEGG: stp:Strop_1803 hypothetical protein.
  
  
 
0.927
Sare_5038
KEGG: stp:Strop_4528 extracellular ligand-binding receptor.
  
  
 
0.919
Sare_1795
PFAM: inner-membrane translocator; KEGG: stp:Strop_1805 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.879
Sare_1794
PFAM: inner-membrane translocator; KEGG: stp:Strop_1804 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.868
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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