STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0702PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: stp:Strop_0760 methyltransferase type 11. (265 aa)    
Predicted Functional Partners:
Sare_0701
KEGG: stp:Strop_0759 extracellular ligand-binding receptor.
       0.723
Sare_3392
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: stp:Strop_3167 ferredoxin-dependent glutamate synthase.
       0.694
rpmD
PFAM: ribosomal protein L30; KEGG: stp:Strop_3905 ribosomal protein L30.
   
   0.693
Sare_1453
PFAM: deoxyribonuclease/rho motif-related TRAM; KEGG: stp:Strop_1488 deoxyribonuclease/rho motif-related TRAM; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
  
 0.689
Sare_0703
PFAM: inner-membrane translocator; KEGG: stp:Strop_0761 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.668
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.632
Sare_4343
PFAM: peptidase M48 Ste24p; KEGG: stp:Strop_3958 peptidase M48, Ste24p.
  
     0.523
Sare_0699
Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; KEGG: stp:Strop_0757 ATP-binding region, ATPase domain protein domain protein.
 
     0.506
Sare_0704
PFAM: inner-membrane translocator; KEGG: stp:Strop_0762 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.501
Sare_0705
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_0763 ABC transporter related.
       0.501
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.