STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0723KEGG: bmn:BMA10247_0293 hypothetical protein. (80 aa)    
Predicted Functional Partners:
Sare_0724
PFAM: Na+/solute symporter; KEGG: ace:Acel_2056 Na+/solute symporter.
 
     0.955
Sare_1929
PFAM: cell divisionFtsK/SpoIIIE; KEGG: sen:SACE_7023 hypothetical protein.
  
     0.711
Sare_0725
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: stp:Strop_0781 hydrolase, TatD family.
       0.581
Sare_4558
PFAM: transposase IS4 family protein; KEGG: sma:SAV7558 IS493-like transposase.
  
     0.574
Sare_3041
PFAM: transposase IS4 family protein; KEGG: sma:SAV7558 IS493-like transposase.
  
     0.573
Sare_3105
PFAM: transposase IS4 family protein; KEGG: sma:SAV7558 IS493-like transposase.
  
     0.573
Sare_1998
PFAM: transposase IS4 family protein; KEGG: sma:SAV7558 IS493-like transposase.
  
     0.570
Sare_0651
KEGG: stp:Strop_0704 hypothetical protein.
  
     0.543
Sare_1287
PFAM: Terpene synthase metal-binding domain protein.
  
     0.494
Sare_4187
Hypothetical protein.
  
     0.494
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.