STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0747PFAM: extracellular solute-binding protein family 1; KEGG: stp:Strop_0803 extracellular solute-binding protein, family 1. (433 aa)    
Predicted Functional Partners:
Sare_0748
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_0804 binding-protein-dependent transport systems inner membrane component.
 0.985
Sare_0749
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_0805 binding-protein-dependent transport systems inner membrane component.
 
  
 0.977
Sare_4657
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: stp:Strop_4220 ABC transporter related.
 
 0.962
Sare_2551
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: stp:Strop_2402 ABC transporter related.
 
 0.950
Sare_3206
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_2982 binding-protein-dependent transport systems inner membrane component.
 
 
 0.920
Sare_1081
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_1188 binding-protein-dependent transport systems inner membrane component.
 
 
 0.899
Sare_2550
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_2401 binding-protein-dependent transport systems inner membrane component.
 
 0.818
Sare_2553
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_2404 binding-protein-dependent transport systems inner membrane component.
 
 
 0.817
Sare_3205
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_2981 binding-protein-dependent transport systems inner membrane component.
 
 
 0.794
Sare_1508
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_1559 binding-protein-dependent transport systems inner membrane component.
 
 
 0.787
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.