STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0753PFAM: inner-membrane translocator; KEGG: stp:Strop_0809 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (441 aa)    
Predicted Functional Partners:
Sare_0752
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_0808 ABC transporter related.
 
 
 0.999
Sare_0754
PFAM: inner-membrane translocator; KEGG: stp:Strop_0810 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
0.999
Sare_0751
PFAM: basic membrane lipoprotein; KEGG: stp:Strop_0807 basic membrane lipoprotein.
 
 
 0.988
Sare_0755
TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: stp:Strop_0811 cytidine deaminase.
 
  
 0.942
Sare_0756
KEGG: stp:Strop_0812 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain.
 
   
 0.868
Sare_0757
KEGG: stp:Strop_0813 hypothetical protein.
       0.607
Sare_0750
KEGG: stp:Strop_0806 hypothetical protein.
 
     0.406
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.