STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0756KEGG: stp:Strop_0812 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain. (426 aa)    
Predicted Functional Partners:
Sare_0755
TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: stp:Strop_0811 cytidine deaminase.
 
 0.998
Sare_0773
TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: stp:Strop_0829 uracil phosphoribosyltransferase; Belongs to the UPRTase family.
 
 
 0.967
Sare_0231
TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: stp:Strop_0203 purine nucleoside phosphorylase.
 
 
 0.963
Sare_2486
PFAM: thymidine kinase; KEGG: stp:Strop_2343 thymidine kinase.
    
 0.934
Sare_0772
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
 
 
 0.929
psuG
Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
 
  
  0.917
pyrR
Uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
     
 0.914
Sare_0268
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: stp:Strop_0229 5'-nucleotidase domain protein; Belongs to the 5'-nucleotidase family.
    
 0.911
Sare_0753
PFAM: inner-membrane translocator; KEGG: stp:Strop_0809 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.868
Sare_0754
PFAM: inner-membrane translocator; KEGG: stp:Strop_0810 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.831
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.