STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0769Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: stp:Strop_0825 penicillinase repressor. (159 aa)    
Predicted Functional Partners:
Sare_0768
PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: stp:Strop_0824 peptidase M48, Ste24p.
 
    0.962
Sare_0534
TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein; KEGG: stp:Strop_0446 heavy metal transport/detoxification protein.
  
  
 0.788
Sare_0770
KEGG: stp:Strop_0826 hypothetical protein.
       0.686
Sare_0771
PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_0827 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
       0.686
Sare_0772
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
       0.686
Sare_0767
KEGG: stp:Strop_0823 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
       0.631
Sare_0766
KEGG: stp:Strop_0822 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.596
Sare_0773
TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: stp:Strop_0829 uracil phosphoribosyltransferase; Belongs to the UPRTase family.
       0.477
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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