STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0793PFAM: O-methyltransferase family 3; KEGG: stp:Strop_0850 caffeoyl-CoA O-methyltransferase. (217 aa)    
Predicted Functional Partners:
Sare_0794
Maf protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     
 0.791
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
  
 0.635
Sare_0914
KEGG: stp:Strop_0977 hypothetical protein.
  
  
 0.539
Sare_0795
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: stp:Strop_0471 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
    0.523
Sare_0796
Hypothetical protein; KEGG: fra:Francci3_3562 translation initiation factor IF-2.
       0.512
Sare_0797
Hypothetical protein.
       0.511
Sare_0635
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0661 short-chain dehydrogenase/reductase SDR.
 
  
   0.466
Sare_0792
Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: stp:Strop_0849 carbamoyl-phosphate synthase L chain, ATP-binding.
       0.438
Sare_4049
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_3673 short-chain dehydrogenase/reductase SDR.
 
  
   0.419
Sare_0671
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_0725 short-chain dehydrogenase/reductase SDR.
 
  
   0.410
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.