STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0799KEGG: stp:Strop_0853 hypothetical protein. (245 aa)    
Predicted Functional Partners:
Sare_0798
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: stp:Strop_0852 protein kinase.
       0.646
Sare_1373
PFAM: membrane-bound metal-dependent hydrolase; KEGG: sma:SAV1574 integral membrane protein.
  
     0.627
Sare_0801
KEGG: stp:Strop_0855 hypothetical protein.
       0.588
Sare_0800
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-E type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_0854 sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.564
Sare_2232
KEGG: stp:Strop_2091 hypothetical protein.
  
     0.422
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.