STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0804PFAM: membrane-flanked domain; KEGG: stp:Strop_0858 membrane-flanked domain. (189 aa)    
Predicted Functional Partners:
Sare_0803
KEGG: stp:Strop_0857 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase.
       0.614
Sare_3256
PFAM: membrane-flanked domain; KEGG: stp:Strop_3030 membrane-flanked domain.
  
  
 0.594
Sare_3550
KEGG: stp:Strop_3318 hypothetical protein.
  
     0.566
Sare_3893
KEGG: stp:Strop_3518 hypothetical protein.
  
    0.524
Sare_3518
KEGG: stp:Strop_3286 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
 
     0.509
Sare_5079
KEGG: stp:Strop_4561 hypothetical protein.
  
     0.507
Sare_3529
Response regulator receiver protein; KEGG: stp:Strop_3297 hypothetical protein.
  
     0.502
Sare_2711
KEGG: stp:Strop_2530 hypothetical protein.
  
     0.485
Sare_0802
PFAM: carboxyl transferase; KEGG: stp:Strop_0856 carboxyl transferase.
       0.421
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.