STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0806PFAM: GtrA family protein; KEGG: stp:Strop_0860 GtrA family protein. (267 aa)    
Predicted Functional Partners:
Sare_0805
PFAM: GtrA family protein; KEGG: stp:Strop_0859 GtrA family protein.
 
    
0.707
pckG
Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.
       0.540
Sare_4112
KEGG: stp:Strop_3731 hypothetical protein.
  
     0.483
Sare_0413
TIGRFAM: DNA binding domain, excisionase family; KEGG: stp:Strop_0343 DNA binding domain, excisionase family.
  
    0.462
Sare_3433
KEGG: stp:Strop_3207 hypothetical protein.
  
     0.454
Sare_3392
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: stp:Strop_3167 ferredoxin-dependent glutamate synthase.
     
 0.433
Sare_0808
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: stp:Strop_0862 geranylgeranyl reductase.
       0.426
Sare_1825
PFAM: lipopolysaccharide biosynthesis protein; KEGG: stp:Strop_1834 lipopolysaccharide biosynthesis protein.
 
     0.422
Sare_3544
KEGG: stp:Strop_3312 hypothetical protein.
  
     0.418
Sare_3320
KEGG: stp:Strop_3093 hypothetical protein.
  
     0.417
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.