STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0816PFAM: Rhomboid family protein; KEGG: stp:Strop_0870 rhomboid family protein. (217 aa)    
Predicted Functional Partners:
Sare_5099
PFAM: Peptidoglycan-binding domain 1 protein; cell wall hydrolase/autolysin; KEGG: stp:Strop_4581 cell wall hydrolase/autolysin.
  
 
 0.781
Sare_2559
PFAM: band 7 protein; KEGG: stp:Strop_2410 band 7 protein.
   
 0.700
Sare_3244
PFAM: band 7 protein; KEGG: stp:Strop_3018 band 7 protein.
   
 0.700
Sare_0660
KEGG: stp:Strop_0713 hypothetical protein.
  
 
 0.680
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
     
 0.649
tatA
Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.632
Sare_4995
PFAM: Rhomboid family protein; KEGG: stp:Strop_4481 rhomboid family protein.
      
 0.616
Sare_0690
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: stp:Strop_0743 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.562
Sare_0817
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: stp:Strop_0871 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.561
Sare_0815
KEGG: stp:Strop_0869 hypothetical protein.
       0.518
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.