STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0835PFAM: protein of unknown function DUF501; KEGG: stp:Strop_0892 protein of unknown function DUF501. (185 aa)    
Predicted Functional Partners:
Sare_0837
PFAM: Ppx/GppA phosphatase; KEGG: stp:Strop_0894 Ppx/GppA phosphatase.
 
    0.991
Sare_0834
PFAM: Septum formation initiator; KEGG: stp:Strop_0891 septum formation initiator.
 
     0.903
Sare_0836
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_0893 GCN5-related N-acetyltransferase; Belongs to the acetyltransferase family.
       0.865
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
  
    0.759
Sare_2517
Transcriptional regulator, MerR family; SMART: regulatory protein MerR; KEGG: stp:Strop_2379 regulatory protein, MerR.
  
    0.622
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.611
Sare_0162
KEGG: tfu:Tfu_2746 hypothetical protein.
  
     0.591
Sare_4519
PFAM: Phosphoglycerate mutase; KEGG: stp:Strop_4099 phosphoglycerate mutase.
  
     0.562
Sare_4112
KEGG: stp:Strop_3731 hypothetical protein.
  
   
 0.552
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.524
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.