STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0846PFAM: protein of unknown function DUF58; KEGG: stp:Strop_0903 protein of unknown function DUF58. (467 aa)    
Predicted Functional Partners:
Sare_0843
KEGG: stp:Strop_0900 hypothetical protein.
 
     0.964
Sare_0845
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: stp:Strop_0902 ATPase associated with various cellular activities, AAA_3.
 
  
 0.959
Sare_0847
KEGG: stp:Strop_0904 hypothetical protein.
       0.887
Sare_0842
PFAM: Uracil-DNA glycosylase superfamily; KEGG: stp:Strop_0899 uracil-DNA glycosylase superfamily.
       0.821
Sare_0844
KEGG: stp:Strop_0901 hypothetical protein.
       0.800
Sare_0848
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stp:Strop_0905 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.525
Sare_0841
PFAM: dienelactone hydrolase; KEGG: stp:Strop_0898 dienelactone hydrolase.
       0.475
Sare_0171
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: stp:Strop_0162 hypothetical protein.
  
     0.467
purD
KEGG: stp:Strop_0134 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; Belongs to the GARS family.
      
 0.459
Sare_3914
KEGG: stp:Strop_3539 hypothetical protein.
  
     0.439
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.