STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0875PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: stp:Strop_0933 UDP-glucose 6-dehydrogenase. (475 aa)    
Predicted Functional Partners:
Sare_0692
PFAM: Nucleotidyl transferase; KEGG: stp:Strop_0745 putative UTP-glucose-1-phosphate uridylyltransferase GalU.
 
 0.974
Sare_0415
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_0345 NAD-dependent epimerase/dehydratase.
  
 0.937
Sare_0739
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: stp:Strop_0795 UDP-glucose 4-epimerase.
 
 
 0.934
Sare_3827
PFAM: acyltransferase 3; KEGG: stp:Strop_3448 acyltransferase 3.
  
  
 0.866
Sare_0206
KEGG: stp:Strop_0188 hypothetical protein.
  
  
 0.823
Sare_1827
KEGG: stp:Strop_1836 hypothetical protein.
  
  
 0.823
Sare_2018
PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: sen:SACE_0714 dTDP-4-deoxyglucose 3,5-epimerase.
  
  
 0.823
Sare_2338
PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: sma:SAV949 dTDP-4-keto-6-deoxyhexose 3,5-epimerase.
  
  
 0.823
Sare_5019
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: stp:Strop_4509 NAD-dependent epimerase/dehydratase.
 
 0.820
Sare_2336
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: stp:Strop_2222 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.816
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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