STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0891KEGG: stp:Strop_0949 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Sare_0890
KEGG: stp:Strop_0948 hypothetical protein.
 
     0.821
Sare_3627
KEGG: stp:Strop_3385 hypothetical protein.
  
     0.755
Sare_4701
KEGG: stp:Strop_4271 hypothetical protein.
   
    0.724
Sare_1473
KEGG: stp:Strop_1531 hypothetical protein.
  
     0.635
Sare_4710
KEGG: stp:Strop_4276 hypothetical protein.
  
     0.604
Sare_3433
KEGG: stp:Strop_3207 hypothetical protein.
  
     0.579
Sare_3128
KEGG: stp:Strop_2925 hypothetical protein.
  
     0.578
Sare_2248
KEGG: stp:Strop_2105 hypothetical protein.
  
     0.568
Sare_4464
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: stp:Strop_4066 geranylgeranyl reductase.
  
     0.551
Sare_1443
KEGG: stp:Strop_1478 hypothetical protein.
  
     0.540
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.