STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0894PFAM: protein of unknown function DUF779; KEGG: stp:Strop_0956 protein of unknown function DUF779. (114 aa)    
Predicted Functional Partners:
Sare_0895
PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_0957 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    0.952
Sare_0896
Putative phytochrome sensor protein; PFAM: transcriptional regulator domain protein; GAF domain protein; KEGG: stp:Strop_0958 GAF domain protein.
 
     0.885
Sare_0897
PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_0959 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.465
Sare_0893
PFAM: regulatory protein AsnC/Lrp family; KEGG: stp:Strop_0951 regulatory protein, AsnC/Lrp family.
       0.430
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.