STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0905Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_0968 ATP-binding region, ATPase domain protein domain protein. (557 aa)    
Predicted Functional Partners:
Sare_0904
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: stp:Strop_0967 response regulator receiver.
 0.996
Sare_0906
KEGG: stp:Strop_0969 hypothetical protein.
 
     0.951
Sare_2765
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_2569 ATP-binding region, ATPase domain protein domain protein.
  
  
 
0.924
Sare_0907
KEGG: stp:Strop_0970 hypothetical protein.
 
    0.789
Sare_3070
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: stp:Strop_0624 two component transcriptional regulator, winged helix family.
 
 0.747
Sare_0404
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: stp:Strop_0337 two component transcriptional regulator, winged helix family.
 
 0.737
Sare_2766
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: stp:Strop_2570 response regulator receiver.
 
 
 0.723
Sare_1866
PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: stp:Strop_1873 response regulator receiver.
 
 0.712
Sare_3610
Transketolase domain protein; PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; KEGG: stp:Strop_3370 transketolase domain protein.
    
 0.711
Sare_1090
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: stp:Strop_1197 response regulator receiver.
 
 0.698
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.