STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0913KEGG: stp:Strop_0976 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Sare_3514
PFAM: glycosyl transferase group 1; KEGG: stp:Strop_3282 glycosyl transferase, group 1.
  
     0.649
Sare_3472
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_3245 GCN5-related N-acetyltransferase.
  
     0.647
Sare_4208
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: stp:Strop_3818 chorismate mutase.
  
     0.639
Sare_3247
KEGG: stp:Strop_3021 hypothetical protein.
  
     0.636
Sare_0912
Excision promoter, Xis; TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein MerR; KEGG: stp:Strop_0975 DNA binding domain, excisionase family.
       0.603
Sare_5080
PFAM: transcriptional regulator PadR family protein; KEGG: stp:Strop_4562 transcriptional regulator PadR family protein.
  
     0.592
Sare_3498
Conserved hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.590
Sare_4228
KEGG: stp:Strop_3838 hypothetical protein.
  
     0.555
Sare_4729
KEGG: stp:Strop_4294 hypothetical protein.
  
     0.545
Sare_4640
KEGG: stp:Strop_4209 hypothetical protein.
  
     0.533
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (76%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.