STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0923PFAM: protein of unknown function DUF179; KEGG: stp:Strop_0987 protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family. (196 aa)    
Predicted Functional Partners:
Sare_1411
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 0.986
Sare_4877
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
   
 0.983
Sare_1820
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
  
 0.781
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
   
  
 0.694
Sare_0097
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; NHL repeat containing protein; KEGG: stp:Strop_0100 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
   
 
 0.684
Sare_4518
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: stp:Strop_4098 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
   
 
 0.684
Sare_4758
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: stp:Strop_4318 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
   
 
 0.684
Sare_0479
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; DNA polymerase III beta chain; KEGG: sco:SCO1180 DNA polymerase III beta chain.
   
 
 0.682
Sare_2559
PFAM: band 7 protein; KEGG: stp:Strop_2410 band 7 protein.
   
    0.678
Sare_3244
PFAM: band 7 protein; KEGG: stp:Strop_3018 band 7 protein.
   
    0.678
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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