STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0935Hypothetical protein; Belongs to the WXG100 family. (113 aa)    
Predicted Functional Partners:
Sare_0934
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
       0.782
Sare_0936
KEGG: stp:Strop_1435 hypothetical protein.
       0.773
Sare_0933
KEGG: stp:Strop_1434 hypothetical protein.
       0.605
Sare_0937
KEGG: stp:Strop_1436 hypothetical protein.
       0.579
Sare_0938
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: stp:Strop_1437 peptidase S8 and S53, subtilisin, kexin, sedolisin.
       0.577
Sare_0932
Hypothetical protein.
       0.546
Sare_0810
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.456
Sare_3919
TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; glycoside hydrolase 15-related; KEGG: stp:Strop_3544 HAD-superfamily hydrolase, subfamily IIB.
   
    0.456
Sare_0939
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: stp:Strop_1438 cell divisionFtsK/SpoIIIE.
       0.430
Sare_0940
PFAM: protein of unknown function DUF571; KEGG: stp:Strop_1439 hypothetical protein.
       0.430
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.