STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0959PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_1069 major facilitator superfamily MFS_1. (434 aa)    
Predicted Functional Partners:
Sare_0960
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_1070 GCN5-related N-acetyltransferase.
       0.773
Sare_1080
PFAM: extracellular solute-binding protein family 1; KEGG: stp:Strop_1187 extracellular solute-binding protein, family 1.
  
     0.680
Sare_1078
KEGG: stp:Strop_1185 hypothetical protein.
  
     0.655
Sare_5103
KEGG: stp:Strop_4585 hypothetical protein.
  
     0.654
Sare_4678
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: stp:Strop_4248 regulatory protein, ArsR.
 
     0.606
Sare_0961
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_1071 regulatory protein, TetR.
       0.544
Sare_1084
PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: stp:Strop_1191 glycoside hydrolase, family 38.
  
     0.532
Sare_1083
Glycoside hydrolase family 85; PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 85; KEGG: stp:Strop_1190 glycoside hydrolase, family 85.
  
     0.487
Sare_1645
SMART: LamG domain protein jellyroll fold domain protein; KEGG: stp:Strop_1053 LamG domain protein jellyroll fold domain protein.
  
     0.478
Sare_0349
PFAM: Lanthionine synthetase C family protein; KEGG: ava:Ava_B0238 lanthionine synthetase C-like.
  
     0.451
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.