STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0976PFAM: TrkA-N domain protein; KEGG: stp:Strop_1088 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Sare_1261
PFAM: protein of unknown function DUF1271; KEGG: sco:SCO7676 ferredoxin.
   
    0.692
Sare_3558
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: stp:Strop_3324 domain of unknown function DUF1731.
   
    0.674
arcA
Arginine deiminase; PFAM: amidinotransferase; KEGG: stp:Strop_4517 arginine deiminase.
   
    0.672
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
       0.584
Sare_0977
PFAM: pentapeptide repeat protein; KEGG: stp:Strop_1089 pentapeptide repeat protein.
  
    0.546
Sare_3033
PFAM: protein of unknown function DUF262; AAA-4 family protein; KEGG: tma:TM0991 hypothetical protein.
  
    0.542
Sare_3084
PFAM: protein of unknown function DUF262; AAA-4 family protein; KEGG: gka:GK3283 hypothetical protein.
  
    0.542
Sare_2829
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: stp:Strop_2632 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
    0.525
Sare_3945
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: stp:Strop_3566 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
    0.525
Sare_0171
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: stp:Strop_0162 hypothetical protein.
  
    0.480
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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