STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0982PFAM: monooxygenase FAD-binding; KEGG: stp:Strop_1093 monooxygenase, FAD-binding. (369 aa)    
Predicted Functional Partners:
Sare_0203
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpd:RPD_0916 twin-arginine translocation pathway signal.
   
 
  0.903
Sare_0201
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rpd:RPD_0914 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
     
  0.900
Sare_0202
PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sus:Acid_3649 molybdopterin dehydrogenase, FAD-binding.
     
  0.900
Sare_2135
PFAM: monooxygenase FAD-binding; KEGG: stp:Strop_1172 monooxygenase, FAD-binding.
  
     0.668
Sare_1268
PFAM: monooxygenase FAD-binding; KEGG: sen:SACE_2877 putative 3-(3-hydroxylphenyl)-propionate hydroxylase.
  
     0.535
Sare_2333
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bxe:Bxe_C1006 putative flavoprotein monooxygenase.
  
     0.500
Sare_0983
Cytochrome c oxidase subunit I type; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
       0.486
Sare_2693
PFAM: monooxygenase FAD-binding; KEGG: stp:Strop_2509 monooxygenase, FAD-binding.
  
     0.467
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.459
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.