STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1014PFAM: nuclear export factor GLE1; KEGG: stp:Strop_1123 nuclear export factor GLE1. (240 aa)    
Predicted Functional Partners:
Sare_1013
PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: stp:Strop_1122 copper resistance protein CopC.
 
  
 0.989
Sare_0186
PFAM: copper resistance D domain protein; KEGG: stp:Strop_0172 copper resistance D domain protein.
  
  
 0.794
Sare_0957
PFAM: copper resistance D domain protein; KEGG: sma:SAV4241 putative integral membrane protein.
 
  
 0.784
Sare_2789
PFAM: copper resistance protein CopC; KEGG: stp:Strop_2591 copper resistance protein CopC.
  
  
 0.756
Sare_1012
Hypothetical protein.
       0.474
Sare_1015
KEGG: stp:Strop_1124 hypothetical protein.
       0.465
Sare_1740
PFAM: cyclase/dehydrase; KEGG: stp:Strop_1754 cyclase/dehydrase.
  
     0.447
Sare_2519
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: stp:Strop_2381 regulatory protein, MerR.
  
     0.442
Sare_1010
PFAM: DSBA oxidoreductase; KEGG: stp:Strop_1120 DsbA oxidoreductase.
       0.429
Sare_1011
PFAM: DoxX family protein; KEGG: stp:Strop_1121 DoxX family protein.
  
    0.426
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.