STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1016KEGG: stp:Strop_1125 hypothetical protein. (419 aa)    
Predicted Functional Partners:
Sare_4783
Hypothetical protein; KEGG: nfa:nfa35640 putative transporter.
 
   
 0.608
orn
Exonuclease RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.
       0.605
Sare_3498
Conserved hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
 
   
 0.515
Sare_1697
KEGG: stp:Strop_1699 hypothetical protein.
 
  
 0.510
Sare_0906
KEGG: stp:Strop_0969 hypothetical protein.
  
     0.506
Sare_4971
KEGG: stp:Strop_4458 hypothetical protein.
  
     0.451
Sare_0874
KEGG: stp:Strop_0932 hypothetical protein.
  
     0.447
Sare_3479
KEGG: stp:Strop_3252 hypothetical protein.
 
   
 0.443
Sare_2990
KEGG: kra:Krad_0938 aminoglycoside phosphotransferase.
  
    0.441
Sare_1437
KEGG: stp:Strop_1472 hypothetical protein.
  
     0.438
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.